BLASTP 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(905 letters)
Database: pdb
19,392 sequences; 4,180,052 total letters
Searching.......................................done
Score E
Sequences producing significant alignments: (bits) Value
PDB:1I84S Smooth Muscle Myosin Heavy Chain; 47 2e-05
PDB:1QB3 Cyclin-Dependent Kinases Regulatory Subunit; 41 0.001
PDB:4HB1 Dhp1; 35 0.070
PDB:1F5N Interferon-Induced Guanylate-Binding Protein 1; 33 0.24
PDB:1DG3 Interferon-Induced Guanylate-Binding Protein 1; 33 0.24
PDB:1EU0 Involucrin; 33 0.30
PDB:1BZIB Fas; 32 0.62
PDB:1JFIB Transcription Regulator Nc2 Alpha Chain; 31 1.6
PDB:1E5W Moesin; 31 1.6
>PDB:1I84S Smooth Muscle Myosin Heavy Chain;
Length = 1184
Score = 46.7 bits (118), Expect = 2e-05
Identities = 26/130 (20%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 159 ITVAQQQVQRQIEQQKGQQTAQTQLEQQRQLLVQQQQQQQL---RNQIQRQQQQQFRHHV 215
+ V +Q+ + Q + ++ Q+T + Q + + +L +Q+ QL +N +Q + Q + +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 216 QIQQQQ-----QKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQ 270
+ ++ + +KQ+ ++ H+ + + ++++++ QQ Q ++++ QQQ ++Q +++
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 271 IPQSQQVPQV 280
Q Q+ +V
Sbjct: 970 ARQKLQLEKV 979
Score = 38.7 bits (95), Expect = 0.006
Identities = 23/148 (15%), Positives = 77/148 (51%), Gaps = 4/148 (2%)
Query: 128 IAQLPLATQQQVLNKLRQQAIAKNNPQVVNAITVAQQQVQRQIEQQKGQQTAQTQLEQQR 187
I L T+Q+ + + + + + + A ++ Q+ + + + Q +L+ +
Sbjct: 846 IXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET 905
Query: 188 QLLVQQQQQQQLRNQIQRQQQQQFRHHVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQ 247
+L + ++ + +R ++Q+ ++ H ++ + ++++++ QQ Q ++++ QQQ +
Sbjct: 906 ELYAEAEEMR-VRLAAKKQELEEILHEMEARIEEEEERSQQLQ---AEKKKMQQQMLDLE 961
Query: 248 QQQQQQQQQQQQQQQQQQQQQGQIPQSQ 275
+Q ++++ +Q+ Q ++ G+I + +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKME 989
Score = 29.9 bits (70), Expect = 2.7
Identities = 31/175 (17%), Positives = 79/175 (44%), Gaps = 16/175 (9%)
Query: 127 QIAQLPLATQQQVLNKLRQQAIAKNNPQVVNAITVAQQQVQRQIEQQKGQQTA-----QT 181
+I + +A Q Q L ++A AK Q+ +I Q V+ +
Sbjct: 790 KITDVIIAFQAQCRGYLARKAFAKRQQQL-ESIFCIQYNVRSFMNVXHWPWMXLFFXIXP 848
Query: 182 QLEQQRQLLVQQQQQQQLRNQIQRQQQQQF------RHHVQIQQQ----QQKQQQQQQQH 231
L+ RQ Q + ++L+ +RQQ+ + + H Q+ ++ Q+K Q + + +
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 232 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQIPQSQQVPQVRSMSGQ 286
+ ++ + + ++Q+ ++ + + + ++++++ QQ Q + + Q+ + Q
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
>PDB:1QB3 Cyclin-Dependent Kinases Regulatory Subunit;
Length = 150
Score = 40.8 bits (101), Expect = 0.001
Identities = 21/29 (72%), Positives = 21/29 (72%)
Query: 250 QQQQQQQQQQQQQQQQQQQGQIPQSQQVP 278
QQQQQQQQQQQQQQQQ Q I QVP
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVP 146
Score = 39.7 bits (98), Expect = 0.003
Identities = 20/29 (68%), Positives = 21/29 (71%)
Query: 244 QQQQQQQQQQQQQQQQQQQQQQQQQGQIP 272
QQQQQQQQQQQQQQQQ Q Q Q+P
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVP 146
Score = 38.7 bits (95), Expect = 0.006
Identities = 21/32 (65%), Positives = 21/32 (65%)
Query: 240 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQI 271
QQQQQQQQQQQQQQQQ Q Q Q QI
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVPPQI 149
Score = 38.0 bits (93), Expect = 0.010
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 214 HVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 266
H+ + ++ + + + QQQQQQQQQQQQQQQQ Q Q Q Q
Sbjct: 96 HILLFKRPLNYEAELRAATAAAQQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
Score = 37.6 bits (92), Expect = 0.013
Identities = 20/31 (64%), Positives = 20/31 (64%)
Query: 237 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 267
QQQQQQQQQQQQQQQQ Q Q Q Q
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
Score = 37.6 bits (92), Expect = 0.013
Identities = 20/31 (64%), Positives = 20/31 (64%)
Query: 238 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 268
QQQQQQQQQQQQQQQQ Q Q Q Q
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
Score = 37.3 bits (91), Expect = 0.016
Identities = 20/31 (64%), Positives = 20/31 (64%)
Query: 243 QQQQQQQQQQQQQQQQQQQQQQQQQQGQIPQ 273
QQQQQQQQQQQQQQQQ Q Q PQ
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
Score = 36.6 bits (89), Expect = 0.026
Identities = 19/48 (39%), Positives = 25/48 (51%)
Query: 208 QQQFRHHVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQ 255
++ + +++ QQQQQQ QQQQQQQQQ Q Q Q Q
Sbjct: 101 KRPLNYEAELRAATAAAQQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
Score = 36.6 bits (89), Expect = 0.026
Identities = 20/49 (40%), Positives = 25/49 (50%)
Query: 211 FRHHVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 259
F+ + + + + QQ QQQQQQQQQQQQQ Q Q Q Q
Sbjct: 100 FKRPLNYEAELRAATAAAQQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
Score = 28.9 bits (67), Expect = 5.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 259 QQQQQQQQQQGQIPQSQQVPQVRSMSGQPP 288
QQQQQQQQQQ Q Q Q + + PP
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQVPP 147
>PDB:4HB1 Dhp1;
Length = 108
Score = 35.2 bits (85), Expect = 0.070
Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 3/96 (3%)
Query: 158 AITVAQQQVQRQIEQQK---GQQTAQTQLEQQRQLLVQQQQQQQLRNQIQRQQQQQFRHH 214
A+ AQQ +Q+ E K G++ + L+Q +QLL Q Q+ + + +Q +
Sbjct: 9 ALQQAQQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQELAKKGGGGEELLKQALQQA 68
Query: 215 VQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQ 250
Q+ QQ Q+ ++ + +Q QQ QQ QQ Q+
Sbjct: 69 QQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQE 104
Score = 28.9 bits (67), Expect = 5.6
Identities = 28/108 (25%), Positives = 52/108 (47%), Gaps = 12/108 (11%)
Query: 127 QIAQLPLATQQQVLNKLRQQAIAKNNPQVV-NAITVAQQQVQRQIEQQK----GQQTAQT 181
++ + L QQ+L + ++ A +++ A+ AQQ +Q+ E K G++ +
Sbjct: 4 ELLKQALQQAQQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQELAKKGGGGEELLKQ 63
Query: 182 QLEQQRQLLVQQQQQQQLRNQIQRQQQQQFRHHVQIQQQQQKQQQQQQ 229
L+Q +QLL Q Q+ + + +Q +QQ QQ QQ Q+
Sbjct: 64 ALQQAQQLLQQAQELAKKGGGEELLKQ-------ALQQAQQLLQQAQE 104
>PDB:1F5N Interferon-Induced Guanylate-Binding Protein 1;
Length = 592
Score = 33.4 bits (80), Expect = 0.24
Identities = 21/105 (20%), Positives = 59/105 (56%), Gaps = 12/105 (11%)
Query: 177 QTAQTQLEQQRQLLVQQQQQQQLRNQIQRQQQQQFRHHVQIQQQQQKQQQQQ--QQHQQQ 234
QT QT E+++++ V++ + + Q + H +Q + +Q +Q+++ Q+H +Q
Sbjct: 477 QTDQTLTEKEKEIEVERVKAESA------QASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 530
Query: 235 QQQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQGQIPQSQ 275
++ + + Q ++Q++ + Q+Q+Q ++ Q++ +I +++
Sbjct: 531 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 575
Score = 30.6 bits (72), Expect = 1.6
Identities = 23/130 (17%), Positives = 65/130 (49%), Gaps = 17/130 (13%)
Query: 146 QAIAKNNPQVVNAI-----TVAQQQVQRQIEQQKGQQTAQTQLEQQRQLLVQQQQQQQLR 200
Q K+ + +AI T+ +++ + ++E+ K + +AQ + ++ Q++ +Q+
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE-SAQASAKMLHEM---QRKNEQMM 517
Query: 201 NQIQRQQQQQFRH--------HVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQ 252
Q +R Q+ + VQ+ ++Q++ + Q Q+Q ++ Q++ + + + Q
Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 577
Query: 253 QQQQQQQQQQ 262
Q + ++++
Sbjct: 578 DLQTKMRRRK 587
>PDB:1DG3 Interferon-Induced Guanylate-Binding Protein 1;
Length = 592
Score = 33.4 bits (80), Expect = 0.24
Identities = 21/105 (20%), Positives = 59/105 (56%), Gaps = 12/105 (11%)
Query: 177 QTAQTQLEQQRQLLVQQQQQQQLRNQIQRQQQQQFRHHVQIQQQQQKQQQQQ--QQHQQQ 234
QT QT E+++++ V++ + + Q + H +Q + +Q +Q+++ Q+H +Q
Sbjct: 477 QTDQTLTEKEKEIEVERVKAESA------QASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 530
Query: 235 QQQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQGQIPQSQ 275
++ + + Q ++Q++ + Q+Q+Q ++ Q++ +I +++
Sbjct: 531 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 575
Score = 30.6 bits (72), Expect = 1.6
Identities = 23/130 (17%), Positives = 65/130 (49%), Gaps = 17/130 (13%)
Query: 146 QAIAKNNPQVVNAI-----TVAQQQVQRQIEQQKGQQTAQTQLEQQRQLLVQQQQQQQLR 200
Q K+ + +AI T+ +++ + ++E+ K + +AQ + ++ Q++ +Q+
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE-SAQASAKMLHEM---QRKNEQMM 517
Query: 201 NQIQRQQQQQFRH--------HVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQ 252
Q +R Q+ + VQ+ ++Q++ + Q Q+Q ++ Q++ + + + Q
Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 577
Query: 253 QQQQQQQQQQ 262
Q + ++++
Sbjct: 578 DLQTKMRRRK 587
>PDB:1EU0 Involucrin;
Length = 50
Score = 33.1 bits (79), Expect = 0.30
Identities = 15/49 (30%), Positives = 31/49 (62%)
Query: 218 QQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 266
Q + +QQ+ Q +H +QQ+ Q +Q ++Q+ Q + +QQ+ Q + + Q+
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQE 49
Score = 32.0 bits (76), Expect = 0.62
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 220 QQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQG 269
Q + +QQ+ Q + +QQ+ Q +Q ++Q+ Q + +QQ+ Q + + Q+G
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQEG 50
Score = 31.3 bits (74), Expect = 1.0
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 230 QHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQI 271
Q + +QQ+ Q + +QQ+ Q +Q ++Q+ Q + +QQ+GQ+
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQL 42
Score = 29.9 bits (70), Expect = 2.7
Identities = 13/49 (26%), Positives = 30/49 (60%)
Query: 216 QIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 264
Q++ +Q++ Q + QQ+ Q +Q ++Q+ Q + +QQ+ Q + + Q+
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQE 49
Score = 29.9 bits (70), Expect = 2.7
Identities = 14/49 (28%), Positives = 29/49 (58%)
Query: 219 QQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 267
Q + +QQ+ Q +QQ+ Q +Q ++Q+ Q + +QQ+ Q + + Q+
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQE 49
Score = 29.9 bits (70), Expect = 2.7
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 214 HVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 259
H++ Q+ Q K +QQ+ +Q ++Q+ Q + +QQ+ Q + + Q+
Sbjct: 4 HLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQE 49
Score = 29.2 bits (68), Expect = 4.4
Identities = 14/49 (28%), Positives = 29/49 (58%)
Query: 210 QFRHHVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQ 258
Q +H Q + Q + +QQ+ Q +Q ++Q+ Q + +QQ+ Q + + Q+
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQE 49
Score = 28.2 bits (65), Expect = 9.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 240 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQIPQSQQ 276
Q + +QQ+ Q + +QQ+ Q +Q ++Q+GQ+ +Q
Sbjct: 1 QLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQ 37
>PDB:1BZIB Fas;
Length = 281
Score = 32.0 bits (76), Expect = 0.62
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 66 QQQQTSPPPQTH------QSPPPPPQQSQP----IANQSATSTPPPPPAPHNLHPQIGQV 115
QQ P PQ + SP PP P + + PPPPP P L P
Sbjct: 2 QQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPPP 61
Query: 116 PLAPAPINLPP 126
PL P P LPP
Sbjct: 62 PLPPLP--LPP 70
>PDB:1JFIB Transcription Regulator Nc2 Alpha Chain;
Length = 179
Score = 30.6 bits (72), Expect = 1.6
Identities = 18/67 (26%), Positives = 33/67 (48%)
Query: 203 IQRQQQQQFRHHVQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 262
++R++ ++ I +++ +QQQ+ + +QQQ + QQ+ Q QQ QQ Q
Sbjct: 102 LKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASA 161
Query: 263 QQQQQQG 269
Q G
Sbjct: 162 SASNQAG 168
Score = 28.9 bits (67), Expect = 5.6
Identities = 15/57 (26%), Positives = 32/57 (55%)
Query: 215 VQIQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQI 271
V +++++ + + +++ +QQQ+ + +QQQ + QQ+ Q QQ QQ Q+
Sbjct: 100 VALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQL 156
Score = 28.9 bits (67), Expect = 5.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 220 QQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQIPQSQQ 276
+++ +QQQ+ + +QQQ + QQ+ Q QQ QQ Q Q Q ++
Sbjct: 118 EEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASASNQAGSSQDEE 174
Score = 28.5 bits (66), Expect = 7.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 217 IQQQQQ---KQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQI 271
++QQQ+ K +QQQ + QQ+ Q QQ QQ Q Q Q ++ I
Sbjct: 122 LRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASASNQAGSSQDEEDDDDI 179
>PDB:1E5W Moesin;
Length = 346
Score = 30.6 bits (72), Expect = 1.6
Identities = 8/47 (17%), Positives = 35/47 (74%)
Query: 217 IQQQQQKQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 263
I+ QQ K Q ++++HQ+Q ++ + ++++++ ++++++ ++++++
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
Database: pdb
Posted date: Sep 20, 2001 2:27 AM
Number of letters in database: 4,180,052
Number of sequences in database: 19,392
Lambda K H
0.312 0.129 0.366
Gapped
Lambda K H
0.243 0.0240 0.100
Matrix: BLOSUM62
Gap Penalties: Existence: 10, Extension: 1
Number of Hits to DB: 7562529
Number of Sequences: 19392
Number of extensions: 324029
Number of successful extensions: 1167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 81
length of query: 905
length of database: 4,180,052
effective HSP length: 51
effective length of query: 854
effective length of database: 3,191,060
effective search space: 2725165240
effective search space used: 2725165240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 42 (14.7 bits)
X3: 71 (24.9 bits)
S1: 42 (21.9 bits)
S2: 65 (28.2 bits)