BLAST Search Results BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= (566 letters) Database: pdb 19,392 sequences; 4,180,052 total letters Searching.......................................doneScore E Sequences producing significant alignments: (bits) Value PDB:1XND Xylanase (Endo-1,4-Beta-Xylanase) (E.C.3.2.1.8) ... 28 5.4 PDB:1FT8 Tip Associating Protein; 28 5.4 PDB:1FO1 Nuclear Rna Export Factor 1; 28 5.4 PDB:1XYP Endo-1,4-Beta-Xylanase Ii; 27 8.7 PDB:1XYO Endo-1,4-Beta-Xylanase Ii; 27 8.7 PDB:1REF Endo-1,4-Beta-Xylanase Ii; 27 8.7 PDB:1REE Endo-1,4-Beta-Xylanase Ii; 27 8.7 PDB:1RED Endo-1,4-Beta-Xylanase Ii; 27 8.7 PDB:1ENX Endo-1,4-Beta-Xylanase Ii; 27 8.7>PDB:1XND Xylanase (Endo-1,4-Beta-Xylanase) (E.C.3.2.1.8) Length = 190 Score = 28.2 bits (65), Expect = 5.4 Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDA-ASSQVSIVKLDTQLITL 388 T+ +A AS +++ +D Q++ + Sbjct: 150 VNTANHFNAWASHGLTLGTMDYQIVAV 176>PDB:1FT8 Tip Associating Protein; Length = 271 Score = 28.2 bits (65), Expect = 5.4 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 20/114 (17%) Query: 406 LLSLINSTHLLPLQPIEIDY-----TVRVDKASTYGELVLDIEVPDVNALKFNNTQRESQ 460 LLS+I S +P PIE Y V+ AST L A+ + RE++ Sbjct: 34 LLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASAL---------KAVNYKILDRENR 84 Query: 461 IGAAELNENARE---LEQIKPKIALQDKEITSVLSNLHESNKRYRFFKKISEDP 511 + +N +A L ++KP+ Q +++ ++S ++ +++ K + DP Sbjct: 85 RISIIINSSAPPHTILNELKPE---QVEQLKLIMSKRYDGSQQVLDLKGLRSDP 135>PDB:1FO1 Nuclear Rna Export Factor 1; Length = 271 Score = 28.2 bits (65), Expect = 5.4 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 20/114 (17%) Query: 406 LLSLINSTHLLPLQPIEIDY-----TVRVDKASTYGELVLDIEVPDVNALKFNNTQRESQ 460 LLS+I S +P PIE Y V+ AST L A+ + RE++ Sbjct: 34 LLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASAL---------KAVNYKILDRENR 84 Query: 461 IGAAELNENARE---LEQIKPKIALQDKEITSVLSNLHESNKRYRFFKKISEDP 511 + +N +A L ++KP+ Q +++ ++S ++ +++ K + DP Sbjct: 85 RISIIINSSAPPHTILNELKPE---QVEQLKLIMSKRYDGSQQVLDLKGLRSDP 135>PDB:1XYP Endo-1,4-Beta-Xylanase Ii; Length = 190 Score = 27.5 bits (63), Expect = 8.7 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDAASSQ-VSIVKLDTQLITL 388 T+ +A + Q +++ +D Q++ + Sbjct: 150 VNTANHFNAWAQQGLTLGTMDYQIVAV 176>PDB:1XYO Endo-1,4-Beta-Xylanase Ii; Length = 190 Score = 27.5 bits (63), Expect = 8.7 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDAASSQ-VSIVKLDTQLITL 388 T+ +A + Q +++ +D Q++ + Sbjct: 150 VNTANHFNAWAQQGLTLGTMDYQIVAV 176>PDB:1REF Endo-1,4-Beta-Xylanase Ii; Length = 190 Score = 27.5 bits (63), Expect = 8.7 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDAASSQ-VSIVKLDTQLITL 388 T+ +A + Q +++ +D Q++ + Sbjct: 150 VNTANHFNAWAQQGLTLGTMDYQIVAV 176>PDB:1REE Endo-1,4-Beta-Xylanase Ii; Length = 190 Score = 27.5 bits (63), Expect = 8.7 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDAASSQ-VSIVKLDTQLITL 388 T+ +A + Q +++ +D Q++ + Sbjct: 150 VNTANHFNAWAQQGLTLGTMDYQIVAV 176>PDB:1RED Endo-1,4-Beta-Xylanase Ii; Length = 190 Score = 27.5 bits (63), Expect = 8.7 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDAASSQ-VSIVKLDTQLITL 388 T+ +A + Q +++ +D Q++ + Sbjct: 150 VNTANHFNAWAQQGLTLGTMDYQIVAV 176>PDB:1ENX Endo-1,4-Beta-Xylanase Ii; Length = 190 Score = 27.5 bits (63), Expect = 8.7 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 4/87 (4%) Query: 305 EPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENLMGNRNNHNSNTS 364 E F +Y+P T L TS +++ IY+ +N+ + F R NH S+ S Sbjct: 91 ENFGTYNPS-TGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGS 149 Query: 365 --TSKMLDAASSQ-VSIVKLDTQLITL 388 T+ +A + Q +++ +D Q++ + Sbjct: 150 VNTANHFNAWAQQGLTLGTMDYQIVAV 176Database: pdb Posted date: Sep 20, 2001 2:27 AM Number of letters in database: 4,180,052 Number of sequences in database: 19,392 Lambda K H 0.311 0.128 0.354 Gapped Lambda K H 0.243 0.0240 0.100 Matrix: BLOSUM62 Gap Penalties: Existence: 10, Extension: 1 Number of Hits to DB: 4630602 Number of Sequences: 19392 Number of extensions: 187884 Number of successful extensions: 361 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 361 Number of HSP's gapped (non-prelim): 11 length of query: 566 length of database: 4,180,052 effective HSP length: 53 effective length of query: 513 effective length of database: 3,152,276 effective search space: 1617117588 effective search space used: 1617117588 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 42 (14.7 bits) X3: 71 (24.9 bits) S1: 42 (21.8 bits) S2: 63 (27.5 bits)
RunBLAST--V2.0--14-Dec-2000--JackL