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BLASTP 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= blast.seq  [Unknown form], 825 bases, D2BEEA53 checksum.
         (825 letters)

Database: pdb
           19,392 sequences; 4,180,052 total letters

Searching.......................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PDB:1F5N Interferon-Induced Guanylate-Binding Protein 1;               31  1.5
PDB:1DG3 Interferon-Induced Guanylate-Binding Protein 1;               31  1.5
PDB:1FXKB Prefoldin;                                                   29  4.9
PDB:1FXKA Prefoldin;                                                   29  4.9
PDB:1A5J B-Myb;                                                        28  7.9

>PDB:1F5N Interferon-Induced Guanylate-Binding Protein 1;  
          Length = 592

 Score = 30.6 bits (72), Expect = 1.5
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 18/107 (16%)

Query: 621 KTVQSMTQRAIQSAESIKSQKEEISDQKPIEHIKEGSEIAISSLGYRSHIFATNEERQMN 680
           K+ +SMT   +Q+ +++  +++EI     +E +K  S  A + +    H      E+ M 
Sbjct: 466 KSKESMTDAILQTDQTLTEKEKEIE----VERVKAESAQASAKM---LHEMQRKNEQMME 518

Query: 681 FLTNELIRLQMEKLDAKLNHLKKLEKFMELERKTLERQQENLLIQRL 727
                      +K  +   HLK+L + ME +R  L ++QE  L  +L
Sbjct: 519 -----------QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554



>PDB:1DG3 Interferon-Induced Guanylate-Binding Protein 1;  
          Length = 592

 Score = 30.6 bits (72), Expect = 1.5
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 18/107 (16%)

Query: 621 KTVQSMTQRAIQSAESIKSQKEEISDQKPIEHIKEGSEIAISSLGYRSHIFATNEERQMN 680
           K+ +SMT   +Q+ +++  +++EI     +E +K  S  A + +    H      E+ M 
Sbjct: 466 KSKESMTDAILQTDQTLTEKEKEIE----VERVKAESAQASAKM---LHEMQRKNEQMME 518

Query: 681 FLTNELIRLQMEKLDAKLNHLKKLEKFMELERKTLERQQENLLIQRL 727
                      +K  +   HLK+L + ME +R  L ++QE  L  +L
Sbjct: 519 -----------QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554



>PDB:1FXKB Prefoldin;                                       
          Length = 109

 Score = 28.9 bits (67), Expect = 4.9
 Identities = 28/97 (28%), Positives = 49/97 (49%), Gaps = 18/97 (18%)

Query: 628 QRAIQSAESIKSQKEEISDQ--KPIEHIKEGSEIAISSLGYRSHIFATNEERQMNFLTNE 685
           Q+  Q A++I  QK+ +  Q  +  + ++E S  A  +  Y+S               N 
Sbjct: 10  QQLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSS-------------GNI 56

Query: 686 LIRLQMEKLDAKLNHLKKLEKFMELERKTLERQQENL 722
           LIR+  ++L  +L   +KLE  ++L  KT+ERQ+E +
Sbjct: 57  LIRVAKDELTEELQ--EKLET-LQLREKTIERQEERV 90



>PDB:1FXKA Prefoldin;                                       
          Length = 107

 Score = 28.9 bits (67), Expect = 4.9
 Identities = 28/97 (28%), Positives = 49/97 (49%), Gaps = 18/97 (18%)

Query: 628 QRAIQSAESIKSQKEEISDQ--KPIEHIKEGSEIAISSLGYRSHIFATNEERQMNFLTNE 685
           Q+  Q A++I  QK+ +  Q  +  + ++E S  A  +  Y+S               N 
Sbjct: 11  QQLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSS-------------GNI 57

Query: 686 LIRLQMEKLDAKLNHLKKLEKFMELERKTLERQQENL 722
           LIR+  ++L  +L   +KLE  ++L  KT+ERQ+E +
Sbjct: 58  LIRVAKDELTEELQ--EKLET-LQLREKTIERQEERV 91



>PDB:1A5J B-Myb;                                           
          Length = 110

 Score = 28.2 bits (65), Expect = 7.9
 Identities = 11/36 (30%), Positives = 25/36 (68%), Gaps = 1/36 (2%)

Query: 527 WSKEDLQKLLKGIQEFGA-DWYKVAKNVGNKSPEQC 561
           W+KE+ QK+++ ++++G   W  +AK++  +  +QC
Sbjct: 10  WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQC 45



  Database: pdb
    Posted date:  Sep 20, 2001  2:27 AM
  Number of letters in database: 4,180,052
  Number of sequences in database:  19,392
  
Lambda     K      H
   0.307    0.126    0.342 

Gapped
Lambda     K      H
   0.243   0.0240    0.100 


Matrix: BLOSUM62
Gap Penalties: Existence: 10, Extension: 1
Number of Hits to DB: 6077955
Number of Sequences: 19392
Number of extensions: 233273
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 5
length of query: 825
length of database: 4,180,052
effective HSP length: 55
effective length of query: 770
effective length of database: 3,113,492
effective search space: 2397388840
effective search space used: 2397388840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 42 (14.7 bits)
X3: 71 (24.9 bits)
S1: 42 (21.6 bits)
S2: 65 (28.2 bits)








RunBLAST--V2.0--14-Dec-2000--JackL