BLASTP 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blast.seq [Unknown form], 477 bases, 337DDD35 checksum.
(477 letters)
Database: pdb
19,392 sequences; 4,180,052 total letters
Searching.......................................done
Score E
Sequences producing significant alignments: (bits) Value
PDB:1YVNA Actin; 78 4e-15
PDB:1YAGA Actin; 77 8e-15
PDB:1C0FA Gelsolin Segment 1; 74 7e-14
PDB:1DGAA Actin; 74 9e-14
PDB:1DEJA Gelsolin; 73 1e-13
PDB:1C0GA Gelsolin Segment 1; 73 1e-13
PDB:2BTFA Beta-Actin-Profilin Complex ... 73 1e-13
PDB:1D4XA C. Elegans Actin 13; 73 1e-13
PDB:1HLUA Beta-Actin; 73 2e-13
PDB:1DB0A Actin; 71 5e-13
PDB:1ATNA Deoxyribonuclease I Complex With Actin ... 71 5e-13
PDB:1ALMV Myosin; 71 5e-13
PDB:1J6Z Actin Alpha 1; 71 6e-13
PDB:1ESVA Gelsolin; 71 6e-13
PDB:1EQYA Gelsolin; 71 6e-13
PDB:1G51 Aspartyl-Trna Synthetase; 27 7.5
PDB:1EFWA Aspartyl-Trna Synthetase; 27 7.5
>PDB:1YVNA Actin;
Length = 375
Score = 78.3 bits (208), Expect = 4e-15
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+VI NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVG-----DEAQSKR 62
Query: 63 NGDEVYTL--VDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P+++T N K +
Sbjct: 63 G---ILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNR--- 116
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP F + I+ + S G+++ V+D G +V PI G + +A++
Sbjct: 117 EKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAIL 176
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 177 RIDLAGRDLTDY 188
Score = 37.3 bits (91), Expect = 0.008
Identities = 28/109 (25%), Positives = 55/109 (49%), Gaps = 9/109 (8%)
Query: 354 NPNGLGTSHINTNVGDNNSTASSSNISPEQVYSLLLTNVIITGSTSLIEGMEQRIIKELS 413
+P+ LG + G + +T +S V L N++++G T++ G+ +R+ KE++
Sbjct: 263 HPSVLGLE----SAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEIT 318
Query: 414 IRFP-QYKLTTFANQVMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYE 461
P K+ A +RK W+G +A+L ++ W SK++Y+
Sbjct: 319 ALAPSSMKVKIIAPP---ERKYSVWIGGSILASLTTFQ-QMWISKQEYD 363
>PDB:1YAGA Actin;
Length = 375
Score = 77.2 bits (205), Expect = 8e-15
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+VI NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVG-----DEAQSKR 62
Query: 63 NGDEVYTL--VDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P+++T N K +
Sbjct: 63 G---ILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNR--- 116
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP F + I+ + S G+++ V+D G +V PI G + +A++
Sbjct: 117 EKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAIL 176
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 177 RIDLAGRDLTDY 188
Score = 37.3 bits (91), Expect = 0.008
Identities = 28/109 (25%), Positives = 55/109 (49%), Gaps = 9/109 (8%)
Query: 354 NPNGLGTSHINTNVGDNNSTASSSNISPEQVYSLLLTNVIITGSTSLIEGMEQRIIKELS 413
+P+ LG + G + +T +S V L N++++G T++ G+ +R+ KE++
Sbjct: 263 HPSVLGLE----SAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEIT 318
Query: 414 IRFP-QYKLTTFANQVMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYE 461
P K+ A +RK W+G +A+L ++ W SK++Y+
Sbjct: 319 ALAPSSMKVKIIAPP---ERKYSVWIGGSILASLTTFQ-QMWISKQEYD 363
>PDB:1C0FA Gelsolin Segment 1;
Length = 368
Score = 74.1 bits (196), Expect = 7e-14
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 6 KCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGD 65
+ +VI NGS AGF+ + P+ + PS + R G+ ++ D A KR
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPS-IVGRPRHTGKDSYVG------DEAQSKRG-- 56
Query: 66 EVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERY 123
+ TL G+ NWD +E W + + +L+V+PEE P+++T N K A E+
Sbjct: 57 -ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANREKM 112
Query: 124 YELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSK 183
++ F+ N P + I+ + + G+++ V+D G + PI +G + +A++R
Sbjct: 113 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 172
Query: 184 FGG-DFLDFQV 193
G D D+ +
Sbjct: 173 LAGRDLTDYMM 183
Score = 38.3 bits (94), Expect = 0.004
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L NV+++G T++ G+ R+ KEL+ P K+ A +RK W+G +A+L
Sbjct: 286 LYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 342
Query: 447 PSWSLGKWYSKEDYE 461
++ W SKE+Y+
Sbjct: 343 STFQ-QMWISKEEYD 356
>PDB:1DGAA Actin;
Length = 375
Score = 73.7 bits (195), Expect = 9e-14
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Query: 6 KCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGD 65
+ +VI NGS AGF+ + P+ + PS + R G + + + A+ + G
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 66 EVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERYYE 125
G+ NWD +E W + + +L+V+PEE P+++T N K A E+ +
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANREKMTQ 121
Query: 126 LAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFG 185
+ F+ N P + I+ + + G+++ V+D G + PI +G + +A++R
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLA 181
Query: 186 G-DFLDFQV 193
G D D+ +
Sbjct: 182 GRDLTDYMM 190
Score = 38.3 bits (94), Expect = 0.004
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L NV+++G T++ G+ R+ KEL+ P K+ A +RK W+G +A+L
Sbjct: 293 LYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
Query: 447 PSWSLGKWYSKEDYE 461
++ W SKE+Y+
Sbjct: 350 STFQ-QMWISKEEYD 363
>PDB:1DEJA Gelsolin;
Length = 375
Score = 73.4 bits (194), Expect = 1e-13
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Query: 6 KCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGD 65
+ +VI NGS AGF+ + P+ + PS + R G + + + A+ + G
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 66 EVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERYYE 125
G+ NWD +E W + + +L+V+PEE P+++T N K A E+ +
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANREKMTQ 121
Query: 126 LAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFG 185
+ F+ N P + I+ + + G+++ V+D G + PI +G + +A++R
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLA 181
Query: 186 G-DFLDFQV 193
G D D+ +
Sbjct: 182 GRDLTDYMM 190
Score = 36.6 bits (89), Expect = 0.013
Identities = 23/75 (30%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L NV+++G T++ G+ R+ KEL+ P K+ A +RK W+G +A+L
Sbjct: 293 LYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
Query: 447 PSWSLGKWYSKEDYE 461
++ W SK +Y+
Sbjct: 350 STFQ-QMWISKHEYD 363
>PDB:1C0GA Gelsolin Segment 1;
Length = 375
Score = 73.4 bits (194), Expect = 1e-13
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Query: 6 KCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGD 65
+ +VI NGS AGF+ + P+ + PS + R G + + + A+ + G
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 66 EVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERYYE 125
G+ NWD +E W + + +L+V+PEE P+++T N K A E+ +
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANREKMTQ 121
Query: 126 LAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFG 185
+ F+ N P + I+ + + G+++ V+D G + PI +G + +A++R
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLA 181
Query: 186 G-DFLDFQV 193
G D D+ +
Sbjct: 182 GRDLTDYMM 190
Score = 36.6 bits (89), Expect = 0.013
Identities = 23/75 (30%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L NV+++G T++ G+ R+ KEL+ P K+ A +RK W+G +A+L
Sbjct: 293 LYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
Query: 447 PSWSLGKWYSKEDYE 461
++ W SK +Y+
Sbjct: 350 STFQ-QMWISKHEYD 363
>PDB:2BTFA Beta-Actin-Profilin Complex
Length = 375
Score = 73.0 bits (193), Expect = 1e-13
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V+ NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 62
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P+++T N K A
Sbjct: 63 G---ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANR 116
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ N P + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 117 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 177 RLDLAGRDLTDY 188
Score = 35.5 bits (86), Expect = 0.028
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
Query: 447 PSWSLGKWYSKEDYE 461
++ W SK++Y+
Sbjct: 350 STFQ-QMWISKQEYD 363
>PDB:1D4XA C. Elegans Actin 13;
Length = 375
Score = 73.0 bits (193), Expect = 1e-13
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V+ NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 62
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P+++T N K A
Sbjct: 63 G---ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANR 116
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ N P + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 117 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 176
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 177 RLDLAGRDLTDY 188
Score = 35.5 bits (86), Expect = 0.028
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
Query: 447 PSWSLGKWYSKEDYE 461
++ W SK++Y+
Sbjct: 350 STFQ-QMWISKQEYD 363
>PDB:1HLUA Beta-Actin;
Length = 375
Score = 72.7 bits (192), Expect = 2e-13
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V+ NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 62
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P+++T N K A
Sbjct: 63 G---ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANR 116
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ N P + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 117 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 177 RLDLAGRDLTDY 188
Score = 35.5 bits (86), Expect = 0.028
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
Query: 447 PSWSLGKWYSKEDYE 461
++ W SK++Y+
Sbjct: 350 STFQ-QMWISKQEYD 363
>PDB:1DB0A Actin;
Length = 371
Score = 71.3 bits (188), Expect = 5e-13
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 4 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 58
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P ++T N K +
Sbjct: 59 G---ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANR--- 112
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 113 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIM 172
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 173 RLDLAGRDLTDY 184
Score = 33.1 bits (79), Expect = 0.15
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 289 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 345
Query: 447 PSWSLGKWYSKEDYE 461
++ W +K++Y+
Sbjct: 346 STFQ-QMWITKQEYD 359
>PDB:1ATNA Deoxyribonuclease I Complex With Actin
Length = 373
Score = 71.3 bits (188), Expect = 5e-13
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 9 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 63
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P ++T N K +
Sbjct: 64 G---ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANR--- 117
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 118 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIM 177
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 178 RLDLAGRDLTDY 189
Score = 33.1 bits (79), Expect = 0.15
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 294 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 350
Query: 447 PSWSLGKWYSKEDYE 461
++ W +K++Y+
Sbjct: 351 STFQ-QMWITKQEYD 364
>PDB:1ALMV Myosin;
Length = 373
Score = 71.3 bits (188), Expect = 5e-13
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 9 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 63
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P ++T N K +
Sbjct: 64 G---ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANR--- 117
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 118 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIM 177
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 178 RLDLAGRDLTDY 189
Score = 33.1 bits (79), Expect = 0.15
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 294 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 350
Query: 447 PSWSLGKWYSKEDYE 461
++ W +K++Y+
Sbjct: 351 STFQ-QMWITKQEYD 364
>PDB:1J6Z Actin Alpha 1;
Length = 376
Score = 70.9 bits (187), Expect = 6e-13
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 9 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 63
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P ++T N K +
Sbjct: 64 G---ILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANR--- 117
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 118 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIM 177
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 178 RLDLAGRDLTDY 189
Score = 33.1 bits (79), Expect = 0.15
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 294 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 350
Query: 447 PSWSLGKWYSKEDYE 461
++ W +K++Y+
Sbjct: 351 STFQ-QMWITKQEYD 364
>PDB:1ESVA Gelsolin;
Length = 377
Score = 70.9 bits (187), Expect = 6e-13
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 64
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P ++T N K +
Sbjct: 65 G---ILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANR--- 118
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIM 178
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 179 RLDLAGRDLTDY 190
Score = 33.1 bits (79), Expect = 0.15
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 295 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 351
Query: 447 PSWSLGKWYSKEDYE 461
++ W +K++Y+
Sbjct: 352 STFQ-QMWITKQEYD 365
>PDB:1EQYA Gelsolin;
Length = 377
Score = 70.9 bits (187), Expect = 6e-13
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEG-----GEAEFIFGTYNMIDAAAEKR 62
+V NGS AGF+ + P+ + PS + +G G+ + G D A KR
Sbjct: 10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-----DEAQSKR 64
Query: 63 NGDEVYTLVD--SQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL 120
+ TL G+ NWD +E W + + +L+V+PEE P ++T N K +
Sbjct: 65 G---ILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANR--- 118
Query: 121 ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV 180
E+ ++ F+ NVP + I+ + + G+++ V+D G + PI +G + +A++
Sbjct: 119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIM 178
Query: 181 RSKFGG-DFLDF 191
R G D D+
Sbjct: 179 RLDLAGRDLTDY 190
Score = 33.1 bits (79), Expect = 0.15
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 5/75 (6%)
Query: 388 LLTNVIITGSTSLIEGMEQRIIKELSIRFPQ-YKLTTFANQVMMDRKIQGWLGALTMANL 446
L N +++G T++ G+ R+ KE++ P K+ A +RK W+G +A+L
Sbjct: 295 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 351
Query: 447 PSWSLGKWYSKEDYE 461
++ W +K++Y+
Sbjct: 352 STFQ-QMWITKQEYD 365
>PDB:1G51 Aspartyl-Trna Synthetase;
Length = 580
Score = 27.5 bits (63), Expect = 7.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 56 DAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLV 105
D KR G +VD L WD E W Y++ PE+LPL+
Sbjct: 409 DLLGLKREGFRFLWVVDFPLL--EWDEEEEAWTYMHHPFTSPHPEDLPLL 456
>PDB:1EFWA Aspartyl-Trna Synthetase;
Length = 580
Score = 27.5 bits (63), Expect = 7.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 56 DAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLV 105
D KR G +VD L WD E W Y++ PE+LPL+
Sbjct: 409 DLLGLKREGFRFLWVVDFPLL--EWDEEEEAWTYMHHPFTSPHPEDLPLL 456
Database: pdb
Posted date: Sep 20, 2001 2:27 AM
Number of letters in database: 4,180,052
Number of sequences in database: 19,392
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.243 0.0240 0.100
Matrix: BLOSUM62
Gap Penalties: Existence: 10, Extension: 1
Number of Hits to DB: 3904575
Number of Sequences: 19392
Number of extensions: 162946
Number of successful extensions: 471
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 32
length of query: 477
length of database: 4,180,052
effective HSP length: 49
effective length of query: 428
effective length of database: 3,229,844
effective search space: 1382373232
effective search space used: 1382373232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 42 (14.7 bits)
X3: 71 (24.9 bits)
S1: 41 (21.6 bits)
S2: 62 (27.1 bits)